Humans and Domesticated Animals Got High the Same Way, Evolutionarily Speaking

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Convergent evolution, when two separate groups develop traits in response to the same environmental factors, is one of the clearest indicators of adaptation. Think of birds and bats, separate groups that have wings adapted for flight. Convergent evolution at the molecular level can be inferred when consistent changes are seen in the same genes in different populations that have encountered similar changes in environment or selective pressure . Will and Hueta-Sanchez have just published an exciting review article documenting how specific pathways and genes are repeatedly mutated in human and animal populations as they evolved to live in high-altitude, low-oxygen conditions in three populations spanning Asia (the Tibetan Plateau), Africa (the Ethiopian Highlands) and South America (the Andean Altiplano). While this story is just plain interesting for its own sake, it’s also a great illustration of how understanding evolutionary history can yield powerful insights into the adaptive fraction of our genomes. This is just one of several interesting and insightful articles published in this edition of Philosophical Transactions of the Royal Society B, a theme issue on ‘Convergent evolution in the genomics era: new insights and directions'.

Witt & Huerta-Sánchez (2019) Convergent evolution in human and domesticate adaptation to high-altitude environments. Philosophical Transactions of the Royal Society B

Abstract

Humans and their domestic animals have lived and thrived in high-altitude environments worldwide for thousands of years. These populations have developed a number of adaptations to survive in a hypoxic environment, and several genomic studies have been conducted to identify the genes that drive these adaptations. Here, we discuss the various adaptations and genetic variants that have been identified as adaptive in human and domestic animal populations and the ways in which convergent evolution has occurred as these populations have adapted to high-altitude environments. We found that human and domesticate populations have adapted to hypoxic environments in similar ways. Specific genes and biological pathways have been involved in high-altitude adaptation for multiple populations, although the specific variants differ between populations. Additionally, we found that the gene EPAS1 is often a target of selection in hypoxic environments and has been involved in multiple adaptive introgression events. High-altitude environments exert strong selective pressures, and human and animal populations have evolved in convergent ways to cope with a chronic lack of oxygen.


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The Human Family Tree is a Bush

More evidence of branching off and reconnecting in the early history of humans

It has been an exciting week week for human ancestry. First, a new species of hominid was identified in the Philippines, Homo luzonensis, and now there’s evidence of the formerly elusive Denisovans in the ancient ancestry of Papuans. Adding to the excitement, this group found evidence of at least three distinct Denisovan lineages, and that humans likely interbred with Denisovan cousins somewhere around New Guinea. This is all pretty amazing, considering we first became aware of Denisovans from a single DNA sample from a finger, found in a cave, in Siberia.

Multiple Deeply Divergent Denisovan Ancestries in Papuans

The Human Family Tree is a Bush

Jacobs et.al, Cell (Research Article)

Highlights

•A new dataset of 161 genomes covering the understudied Indonesia-New Guinea region

•Introgressing Denisovans comprise at least three genetically divergent groups

•Papuans carry haplotypes from two Denisovan groups, with one unique to Oceania

•Some Denisovan introgression was recent and likely occurred in New Guinea or Wallacea

Summary—Genome sequences are known for two archaic hominins—Neanderthals and Denisovans—which interbred with anatomically modern humans as they dispersed out of Africa. We identified high-confidence archaic haplotypes in 161 new genomes spanning 14 island groups in Island Southeast Asia and New Guinea and found large stretches of DNA that are inconsistent with a single introgressing Denisovan origin. Instead, modern Papuans carry hundreds of gene variants from two deeply divergent Denisovan lineages that separated over 350 thousand years ago. Spatial and temporal structure among these lineages suggest that introgression from one of these Denisovan groups predominantly took place east of the Wallace line and continued until near the end of the Pleistocene. A third Denisovan lineage occurs in modern East Asians. This regional mosaic suggests considerable complexity in archaic contact, with modern humans interbreeding with multiple Denisovan groups that were geographically isolated from each other over deep evolutionary time.


Read the original article HERE … and other summaries here and here.

Classic sex chromosome evolution

Sex chromosome evolution of Wallace's birds-of-paradise

Qi Zhou

Ecology & Evolution

Classic sex chromosome evolution

“Two groups of birds, Darwin’s finches and Birds-of-Paradise are historically and respectively associated with the discoverers of the rules of natural selection:Charles Darwin and Alfred Wallace. These two groups of species are also among the best demonstration of natural selection and sexual selection. We reconstructed the history of sex chromosome evolution of bird-of-paradise, and also other songbirds in this work.”


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Snake venom genomics provides important insights

New insights into chromosome evolution, venom regulation in snakes

How do snake genomes direct the production of deadly venom toxins and other key extreme features of snakes?

Snake venom genomics provides important insights

Snake genomes encode the secrets to their unique and often extreme adaptations, but genome resources for snakes and other reptiles have lagged behind their mammal and bird counterparts.

In a new paper, a team of biologists led by Todd Castoe, associate professor of biology at The University of Texas at Arlington, addressed these questions by generating and analyzing the first most complete chromosome-level genome for a snake – the prairie rattlesnake (Crotalus viridis). Their work, “The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes,” is published in the April issue of Genome Research, the scientific journal published by Cold Spring Harbor Laboratory.

Great story about the application of evolutionary principles to fight cancer

A CLEVER NEW STRATEGY FOR TREATING CANCER, THANKS TO DARWIN

evolutionary principles to fight cancer

ROXANNE KHAMSI (WIRED)

“Even if cancer therapies kill most of the cells they target, a small subset can survive, largely thanks to genetic changes that render them resistant. In advanced-stage cancer, it’s generally a matter of when, not if, the pugnacious surviving cells will become an unstoppable force. Gatenby thought this deadly outcome might be prevented. His idea was to expose a tumor to medication intermittently, rather than in a constant assault, thereby reducing the pressure on its cells to evolve resistance.“


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Ed Yong gets punny about evolution in the Atlantic

This Is a Truly Lousy Experiment About Evolution

By placing feather-eating lice on white, black, and gray pigeons, researchers showed how the parasites change color to better blend in.

“Believing that it is always best to study some special group, I have, after deliberation, taken up domestic pigeons,” wrote one Charles Darwin in On the Origin of Species. Four years earlier, Darwin had taken to raising pigeons in his own dovecote, hobnobbing with other pigeon fanciers, and carefully measuring the birds. In the diverse breeds, with their fantails, feather-duster feet, and frilly backs, Darwin saw validation for his ideas about evolution. If people could artificially select for such astonishing diversity in just a few generations, nature was surely capable of far more over longer timescales.

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More genome the better for plant adaptation

Science: Two genomes may be higher than one for evolutionary adaptation, examine finds [Report]

More genome the better for plant adaptation. Genome Media.

Scientists have revealed how certain wild plants with naturally doubled ‘supergenomes’ can stay ahead of the game when it comes to adapting to climate volatility and hostile environments.

This world-first study, published in Nature Ecology and Evolution,could have significant implications for plant and crop sustainability in the face of climate change.


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